Bioremediation Using Fungi

Bioremediation Using Fungi

Jonathan Shilling is studying how to improve bioremediation rates using fungi. The team are working with fungi that can enhance hydrophobic pollutant capture and in many cases degrade these compounds directly, if not increasing their bioavailability to other microbes in a biofilm. They have already found success with methane remediation using fungi and are studying how that will hold true for a range of other hydrophobic compounds.

Read about Dr. Schilling’s work on bioremediation and related research.

Bioremediation For Turning Waste Into Money

Bioremediation For Turning Waste Into Money

Larry Wackett

 

This project is a collaboration with Bio-Teche to develop methods for bioremediating waste grease in a manner that transforms the carbon into very high-value products. This research will promote a circular economy whereby industry is incentivized to recycle waste because it enhances, rather than drains, company profits. It is a corollary of this proposal that biological waste-to-profits conversion will help usher in a larger role for bioremediation in society.

Principal Investigator: Lawrence Wackett

Read about Dr. Wackett’s work on bioremediation and related research.

The Vision

The Vision

Advancing industry, conserving our environment will enhance opportunities for Minnesota industries, including agriculture and mining, through the use of science and technology to solve environmental challenges and make more efficient use of water resources.

One particularly promising and sustainable approach involves bioremediation, the use of microorganisms to remove pollutants from the environment. Bioremediation is a fundamental area of scientific research that presents new opportunities for researchers to partner with industry to develop solutions for increasingly complex and costly environmental and public health challenges.

This core MnDRIVE area will perform research with the goal of developing technologies around bioremediation to solve environmental challenges in the state while collaborating with industry leaders to target the most critical environmental challenges. In the long-term, targeted efforts will lead to both improved water quality across the Iron Range and the Mississippi and Minnesota River watersheds, and greater employment and commerce.

Engineering Biofilms to Optimize Biodegradation of Lignin Waste

Primary Investigator:  Judy Yang
Co-Investigators: William Wei (Postdoctoral Research Scholar)
Industry Partners: Ecolab
Award Type: Seed Grant – Graduate Research Scholar with NRRI Travel Grant

Problem: Each year, tens of millions of tons of lignin waste are produced worldwide in pulp and paper industries. The presence of lignin in wastewater is a serious environmental problem because lignin has low biodegradability and dark color. Recent studies suggest that bacterium Pseudomonas putida, a “workhorse” for bioremediation, can be used in moving bed biofilm reactors to biodegrade lignin in wastewater and convert it to bioproducts. The performance of the biofilm reactors is controlled by biofilm thickness and density; however, the optimum thickness and density of P. putida biofilms to degrade contaminants remain to be characterized and methods to control biofilm thickness and density are lacking.

Solution: Our goal is to develop a hydrodynamics-based method to optimize the biodegradation of lignin by controlling the thickness and density of P. putida biofilms. We plan to conduct systematically controlled experiments in a customized microfluidic platform to determine (1) the optimum thickness and density of P. putida biofilms that degrade lignin most effectively and (2) the hydrodynamic conditions to control biofilm thickness and density. We will quantify the thickness and density of biofilms and the concentration of naturally fluorescent lignosulfonates using a confocal laser scanning microscope, which has resolution as high as several tens of nanometers. We will conduct biofilm culture and lignin degradation experiments in systematically controlled hydrodynamic conditions, including controlled mean flow velocity and velocity fluctuations, to determine the optimum hydrodynamic condition to culture biofilms that can degrade lignin most effectively. 

Impact: Our study will provide a systematic method to control the degradation efficiency of lignin and other contaminants by biofilms. This method can be used in paper and pulp industries and wastewater plants to remediate lignin and other contaminants effectively. The microfluidics plus confocal imaging platform developed in this study can also be used to test the effectiveness of other biofilm control technologies, such as biofilm targeted chemical additives. Furthermore, the developed microfluidics plus confocal imaging method can be used to study the bioremediation effectiveness of other organisms, such as fungi. 

Byproduct

Byproduct

Byproduct

Art installation at the Fulton Brewing Taproom sheds light on MnDRIVE sponsored sustainable wastewater treatment research.

Byproduct, a new site-specific installation by artist Aaron Dysart, opens at the Fulton Brewery Taproom on September 23 and runs through October 23, 2021. Byproduct will carbonate the façade of the taproom with shifting colors generated from an enormous mirror ball. The colors display data from a sustainable wastewater research project conducted by Paige Novak and her team at the University of Minnesota.

We often overlook the carbon dioxide bubbles drifting up the sides of a pint glass gathering to head. On the one hand, they are just a byproduct of a yeast cell. On the other hand, they are a refreshing grounding in the present moment— and the beer just doesn’t taste right without them. In Byproduct, Dysart uses this visual language of carbonation to speak to innovative research underway at Fulton’s brewery. The installation, which displays some of the team’s data as colorful ‘bubbles’ on the taproom facade, celebrates the continuing push to make the world a better place.

Manufacturing creates waste, and brewing beer is no different. Not only does brewing generate a high volume of wastewater, but this wastewater is also full of carbon-containing compounds that require a lot of energy to treat using standard technology. However, other treatment options operate differently, using bacteria to make energy instead of using energy during wastewater treatment.  

Novak and her team are working on a treatment technology for small to mid-size industries that generates energy (in the form of methane gas) and removes carbon-containing compounds. The collaboration with Dysart allowed the team to share their research with the public as they test their scalable process that treats wastewater onsite while making energy for use at the brewery.

Dysart’s installation presents two colorful light shows comparing the two treatment methods set up side-by-side, treating wastewater at the Fulton Brewery. The first compares the amount of usable energy produced by the Novak lab’s experimental technology with the existing system, which works well but is high-maintenance, energy-intensive, and expensive to use. The second explores the reduction of carbon-containing waste compounds realized through the pilot at Fulton’s brewery. 


 

Aaron Dysart is a sculptor who is interested in using visual language and spectacle to give hidden stories a broader audience. His environmental interventions showcase his love of light shows, fog machines, and data, while his objects showcase his love of a material’s ability to carry content. He has received awards from Franconia Sculpture Park, Forecast Public Art, The Knight Foundation, and The Minnesota State Arts Board, and his work has been in Art in America Magazine, Hyperallergic, Berlin Art Link, and other publications. He has shown nationally and partnered with local and national organizations including the National Park Service, Army Corp of Engineers, NorthernLights.mn, and Mississippi Park Connection. Aaron is currently a City Artist through Public Art Saint Paul. He is embedded in the city of St. Paul, and operates his studio in northeast Minneapolis.

Paige Novak is a professor and the Joseph T. and Rose S. Ling Chair in Environmental Engineering in the Department of Civil, Environmental, and Geo- Engineering at the University of Minnesota. Among other projects, Novak and her team are working on the development of a new type of treatment technology that relies on the encapsulation of bacteria into small, gel-like beads that can be easily deployed and retained—perfect for use at small industries such as craft breweries. This technology treats the waste, and in the process, generates energy in the form of methane gas that can be used on-site. For Dysart and Novak’s collaborative project, funded by the MnDRIVE: Environment Initiative at the University of Minnesota, Novak deployed a small pilot-scale system using these encapsulated bacteria at the Fulton brewery to treat their wastewater in real time, comparing it to a much more operationally and energy-intensive treatment technology. 

Bill Arnold and Natasha Wright were collaborators in the research. Kuang Zhu, Siming Chen, and Olutooni Ajayi also worked on the project

Byproduct is funded by a McKnight Project Grant through Forecast Public Art, and a MnDRIVE: Environment Demonstration Grant through the University of Minnesota.

Photo: Aaron Dysaart © 2021

 

 

Harnessing Microbes for Better Health

Harnessing Microbes for Better Health

Harnessing Microbes for Better Health

UMN researchers study how bacteria can contribute to safer drinking water.

By Shayna Korol and Charlie Kidder

Clean water doesn’t happen by accident. Before it is ready to drink, water must be purified of microbes and other pollutants that are harmful to human health. Most drinking water in the United States is treated through biofiltration, a process that uses filter media, such as sand, anthracite coal, or granular activated carbon (GAC), with attached communities of bacteria to remove harmful microorganisms as well as dissolved contaminants. It seems counterintuitive to cultivate bacteria in a drinking water treatment facility, but it is important to realize that not all bacteria are harmful. In fact, many bacteria are beneficial and can be utilized to improve water quality. 

Biofilters use a granular filter medium such as sand, which is covered with a thin bacterial layer known as a biofilm. As untreated water passes through the biofilter, the grains of filter medium collect the microorganisms and other particles from the incoming water while the biofilm “catches” dissolved pollutants, including nutrients and organic contaminants like pesticides. While water treatment never completely eliminates microbes, biofiltration aims to keep the concentration of harmful pathogens low enough to prevent people from getting sick. 

Not all biofilters are created equal. Some biofilters that use sand as a filter medium are known as slow sand filters. As the name suggests, these filters work relatively slowly, making it difficult for an urban water treatment facility (like the city of Saint Paul’s) to process 50 million gallons a day. Tim LaPara and Ray Hozalski, University of Minnesota professors in the department of Civil, Environmental, and Geo-Engineering and the BioTechnology Institute, study differences between biofilters that can impact water quality. “The slow sand filters don’t work well [for large metropolitan areas like the Twin Cities],” says LaPara. Water treatment plants for large cities typically employ “rapid filters”, which process water at a rate that is more than 10 times greater than slow sand filters. Hence, the number of filters needed is much more manageable, and the plant size is reasonable.

In the early 2000s, Saint Paul had a water quality issue because of a substance called geosmin. Although it is not harmful to human health, geosmin has an unpleasant taste and odor. In order to mitigate geosmin’s effects on the water supply – and cut down on hundreds of yearly complaints from Saint Paul residents – the city installed granular activated carbon (GAC) filters. “The idea was the geosmin would stick to those filters, and water would taste better,” says LaPara. 

In Saint Paul, water quality complaints plummeted by about 90 percent after the GAC filters were put in place. “They went from 250 to 300 complaints down to 15 to 30 complaints per year,” says LaPara, a tremendously low number for a city as big as Saint Paul. 

Like Brita water filters in kitchens across the world, the thought was that the GAC filters would eventually have to be replaced. Implementing the filters cost $5 million, and removing and replacing them would cost the city another $5 million each time. Hozalski estimated that the filters would work for at least five years. Surprisingly, the filters kept working well even after five years. Instead of simply accumulating on the GAC filters as the researchers assumed would eventually happen, the geosmin also was being consumed by the bacterial communities on the biofilm as it passed through the filter. The GAC “takes up all the geosmin during the summer and then slowly dissolves it out the rest of the year, and it dissolves it so slow[ly] that the microbes eat it and nobody ever taste[s it],” explains LaPara. Ten years passed, and the researchers found that the filters worked as well as they did the day they were installed. Thus, the GAC filter media was being bioregenerated, allowing for a sustainable treatment process.

“If the bacteria can biodegrade the compounds [that need to be removed], then you don’t have to replace the media because they can basically take care of it naturally,” says Hozaski. The work by the bacteria on the filters provided millions of dollars in savings. 

As an outgrowth of the GAC filter research that began in the early 2000s, the scientists attempted to understand how the microbial communities in these biofilters evolve and function. In a 2018 journal article, Ph.D. student Ben Ma, together with Hozalski and Prof. Bill Arnold, demonstrated that biofilters can remove a wide variety of trace organic contaminants, including pesticides and pharmaceuticals. Hozalski also lead a study by a research team, which included Ma, LaPara, and Ashley N. Evans from the consulting firm Arcadis, in which samples of filter media were collected from biofilters throughout North America. The researchers found that the microbiome of drinking water biofilters is affected by both environmental factors and filter design. 

They published the basic science study in FEMS Microbiology Ecology. “We were trying to understand how different these biofilters are from location to location,” LaPara says. While Minneapolis filters are very similar to Saint Paul filters, they are different from filters in California. 

“Geographic location seems to have some bearing on the [microbial] communities that evolve, and so the closer that water plants are together, the more similar the communities are; the further they are apart, the more different,” Hozalski explains.  

In 2020, the researchers published a paper in Environmental Science & Technology investigating the effects of biofilter design on both the microbiome of the filter media and filtered water itself. This study, also an extension of the earlier GAC filter research, used GAC-sand and anthracite-sand biofilters. Hozalski also served as lead researcher.

While the biofilters reduced bacterial abundance in the water by about 70 percent, they did not significantly affect the microbial composition that remained in the filtered water. These results suggest the biofilms mostly affect water quality by removing pollutants and nutrients rather than changing the microbial composition of the filtered water. “The biofilter does a lot, but it doesn’t add different microbes to our water,” LaPara says.

By shedding further light on how biofilters function, the researchers are setting the groundwork for better filters – and cleaner water. Hozalski said, “I have been working on biofilters since my Ph.D. studies in the early 1990s, and I still have a lot to learn! They are both simple in design yet decidedly complex when you dig into them.”

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